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jFactor
Product family of refactoring Java browsers: for professional Java development environments such as IBM VisualAge Java. [Commercial] (infos)JRefactory
Open source Java refactoring tool, supports a dozen refactorings; command line options: with/without GUI, comes as plugin for IDEs Elixir, JBuilder, NetBeans: in the first two, can now switch from UML diagram to source code. [Open Source, Apache style] (infos)
Refactorit
Refactoring and code tracking and analysis support tool. May be used standalone or integrated with IDEs such as Netbeans, Forte, JDeveloper and JBuilder. [Commercial] (infos)
SD Times: jFactor Speeds Code-Improvement Process
Instantiations refactoring tool helps meet enterprise standards. (infos)
Transmogrify
A Java code analysis and manipulation architecture. Currently, the focus of the architecture is as a refactoring tool. [Open Source, GPL] (infos)
Xref-Technologies - Xrefactory
A professional development tool for Emacs and XEmacs with intellisense code completion, source browsing and refactoring functions. It was the world's first C and Java refactoring tool. [Commercial] (infos)
OptimalJ - Package Structure Analysis Tool
A tool to analyze and refactor java code. [Commercial, free Beta]. (infos)
JavaRefactor - JEdit Plugin
A plugin that adds automatic refactoring of Java source code to the editor. This currently includes class, field, method, and package renaming and push-down and pull-up of methods and fields in an inheritance hierarchy. [Open Source, LGPL] (infos)
Design Pattern Transformer
A prototype-tool for automatic program transformations, which allows refactoring of programs written in Java language. [Freeware] (infos)
Condenser
Tool to automatically restructure (refactor) Java inheritance hierarchies, and delete duplicate code. Such tools are most useful with OO code, more so prototype-based. Brief description, example diagram, links. [Open Source, MIT] (infos)